April 20, 2017 at 21:26
Rgb
Related entries:
- 08/02/2013 - Mareschal et al, ISMB/ECCB 2013
- 04/09/2014 - Mareschal et al, Bioinformatics 2014
- 04/20/2017 - Rgb
The "R genome browser" package is dedicated to memory efficient genome browsing strategies (both in scripts and interactive sessions) using the R scripting language. It includes classes and functions to manipulate genomic tracks, and a higher level interactive genome browser. It can be downloaded on the CRAN website, or installed directly in R with install.packages("Rgb"). An overview of Rgb capabilities and useful advice can be found in the package vignette.
Human GRCh37 / hg19 annotation tracks :
Last version before assembly update
Human GRCh38 / hg38 annotation tracks :
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Human GRCh37 / hg19 annotation tracks :
Last version before assembly update
- CCDS exons (2014-08-03)
- DGV CNV (2014-10-16)
- DGV supporting variants (2014-10-16)
- NCBI genes (2013-11-27, primary assembly)
- UCSC cytobands (2009-06-09)
Human GRCh38 / hg38 annotation tracks :
- CCDS exons (2017-02-19)
- DGV CNV (2016-08-31)
- DGV supporting variants (2016-08-31)
- NCBI genes (2017-02-23, GRCh38.p7 primary assembly)
- UCSC cytobands (2014-08-10)