Sylvain Mareschal, Ph.D.
Bioinformatics postdoc
February 24, 2017 at 15:24
cghRA 1.6.0
Related entries:
The "Comparative Genomic Hybridization R Analysis" package is dedicated to the analysis of CGH arrays. It extends many Rgb classes and is fully compliant with this interfaced genome browser. It includes interactive interfaces to handle the whole CGH analysis, and several novel algorithms:
- the cghRA copy-calling model
- the cnvScore to detect polymorphisms
- STEPS to prioritize Minimal Common Regions (MCRs)

The package is pre-released for reviewing purpose.

R source package : cghRA_1.6.0.tar.gz
R package for Windows : cghRA_1.6.0.zip
Latest development version can be found on GitHub

To see cghRA capabilities and obtain precious advices on its usage, please refer to its vignette.

See also the Rgb webpage for annotation files useful with cghRA.

cghRA overview